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With Loki unleashing the Chitauri on New York City, Earth’s Mightiest Heroes come together for the first time and save their home from total annihilation. An organization that’s supposed to be on their side, S.H.I.E.L.D., doesn’t make things easy for them, though, making a strange decision that risks countless lives. Well, it turns out there is a good explanation for S.H.I.E.L.D.’s wild request.
The World Security Council Goes With the Nuclear Option in The Avengers

As soon as Loki makes his way to Midgard and uses his scepter to mind-control Clint Barton and Erik Selvig, Fury knows there’s no time to waste. He brings in Tony, Steve Rogers, and Bruce Banner to help track the God of Mischief and retrieve the Tesseract. Of course, Loki prepares for this scenario and gets himself captured so he can unleash the Hulk and put the pieces in place to open the portal for the Chitauri. The heroes are not in a good place after Loki’s escape, as Phil Coulson dies while they’re dealing with other things, but they still want to fight. They all head to New York City, where Loki and his lackeys are setting up shop.
Once the portal opens, all hell breaks loose in the city. There’s no time to fight Loki or grab the Tesseract because there are just so many aliens. The World Security Council, which Fury has to answer to, orders their subordinate to nuke the city to protect the rest of Earth. Fury doesn’t understand the decision and ignores it, but the Council moves forward and sends a missile toward Manhattan. Fortunately, Iron Man intercepts it and uses it to destroy the Chitauri flagship, saving millions in the process. Fury eventually gets his bosses to admit they made the wrong choice, but it turns out some of them have ulterior motives.









